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Interim HD Data Conference

Jan 4, 2022

Operator

day, thank you for standing by, and welcome to the Annexon interim HD data conference call. At this time, all participants are in a listen-only mode. After the speaker's presentation, there will be a question and answer session. To ask a question during the session, you will need to press star one on your telephone. Please be advised that this call is being recorded. If you require any further assistance, please press star zero. I would now like to hand the conference over to your host today, Jennifer Lew, Chief Financial Officer. Please go ahead.

Jennifer Lew
CFO, Annexon Biosciences

Thank you operator, and good afternoon, everyone. Earlier today, we issued a press release outlining interim data from our ongoing Phase II trial of ANX005 in patients with Huntington's disease. That press release, as well as the slides that we'll refer to on today's call, can be found on the investor section of our website at annexonbio.com. On the call with me are Doug Love, CEO, Dr. Ted Yednock, Executive Vice President and Chief Innovation Officer, and Dr. Sanjay Keswani, Executive Vice President and Chief Medical Officer. Before we begin, please note that today's discussion will include forward-looking statements related to Annexon's current plans and expectations, which are subject to certain risks and uncertainties. Actual results may differ materially due to various important factors, including those described in the Risk Factors section of our most recent SEC filing.

These forward-looking statements represent our views as of this call and should not be relied upon as representing our views as of any subsequent date. I'll now turn the call over to Doug.

Douglas Love
President and CEO, Annexon Biosciences

Thank you, Jen, and thank all of you for joining us. Happy New Year, 2022. Gonna be a great year. We're excited to share with you interim data from our ongoing Phase II trial in Huntington's disease. As many of you know, at Annexon, our mission is all about patients and rests on the belief that we can create game-changing medicines for patients living with serious complement-mediated diseases. Now, looking back on 2021, we made significant progress and gained tremendous insights across all of our programs, which has set a strong foundation for explosive next two years. Indeed, as we head into 2022, we are well positioned to more than deliver on our aspirations across three therapeutic franchises: autoimmune, neurodegeneration, and ophthalmology.

To do so, we're leveraging three clinical candidates in five ongoing Phase II trials and anticipate seven clinical readouts by 2023.

Importantly, we're well capitalized into 2024 to achieve our objectives. Turning to slide 5, the first of our upcoming catalysts is the interim data that we're reporting today for our Phase II trial in Huntington's disease with our lead clinical candidate, ANX005. The data we'll walk through today are from an open-label, multicenter, Phase II trial that enrolled a total of 28 patients with or at risk of manifest Huntington's disease. The trial was designed to assess safety and tolerability, PK/PD, as well as clinical measures, with patients treated over a 24-week period, followed by a 12-week off-treatment follow-up period.

The interim data being presented today is on those patients treated with ANX005 over the 24-week period and includes an assessment of 28 patients for safety, 13 patients for target engagement and PK/PD, all 23 patients who completed the six-month treatment period for the clinical measures, and 16 patients who have thus far completed the six-month treatment period for NfL. Turning to slide 6, and as reported in our press release, the initial findings from our Phase II trial build on the scientific hypothesis of our scientific founder, the late Ben Barres, who believed that blocking C1q protects synaptic loss and can lead to rapid functional impact in a host of neurodegenerative diseases.

This discovery has been extensively researched across the globe by both academia and industry, and this Phase II trial, Huntington's disease, is the first clinical test of the hypothesis.

Cutting to the chase, we're quite encouraged by the initial data generated with ANX005 in this study, which has shown robust target engagement in both the serum and CSF, rapid clinical improvement in patients, and a favorable safety profile. Interestingly, findings have also shown that patients with excess complement activity at baseline had statistically better clinical improvement compared to those patients with lower baseline complement activity. The differentiated responses in the two patient populations suggest the responses are real, that the classical complement pathway is playing a key role in the neurodegenerative disease process, and that ANX005 has the potential to provide meaningful benefit to Huntington's disease patients.

As it relates to NfL, no meaningful changes in levels was observed in this early readout, which, as we learn more about NfL, may suggest that longer than six months of treatment is necessary to see a decline in NfL levels in classic CNS diseases. This is particularly relevant here, where our anti-C1Q approach targets the loss of synapses, which occurs prior to the loss of neurons. Overall, as I've said, we find the data set quite promising and are continuing to learn from it, and we look forward to providing a full trial results in Q2 of this year. With that, I'll now turn the call over to Ted Yednock to provide an overview of our anti-C1Q platform approach in neurodegeneration.

Ted Yednock
EVP and Chief Innovation Officer, Annexon Biosciences

That is preserving synapses to improve clinical function, and Dr. Sanjay Keswani thereafter to walk through the interim data analysis. Thank you.

Thank you, Doug, and hello, everyone. Huntington's disease is a devastating neurodegenerative disorder that impacts both motor and cognitive function. It affects a large part of the global population, and there's emerging evidence that indicates that the classical complement cascade drives synaptic loss and disability. On slide nine shows our mechanism of action for C1q inhibition. Our scientific founder, Dr. Ben Barres, in his lab discovered that C1q recognizes synapses in development and then again in neurodegenerative disease. By binding to the synapses in neurodegeneration, C1q causes activation of the classical complement cascade, resulting in neural inflammation and synapse removal, causing further neuronal damage. In this way, C1q becomes an important driver of the neurodegenerative process, independent of the initiating trigger.

By targeting C1q, we're blocking the complement cascade upstream of other complement components to fully shut down this neurodegenerative process and potentially allowing a rapid restoration of synaptic function in preventing neurodegeneration. On Slide 10, it has previously been shown that complement activity is elevated in Huntington's disease patients, and the complement activity correlates with disease severity. The graph on the left shows that as disease progresses through pre-manifest and manifest stages, complement activity increases as measured by the activated complement component C4a in the CSF. Now C4 is the first component of the classical complement cascade acted on by C1q. Its measurement, C4a measurement in the CSF, is a good proximal marker for C1q activity. Of note, patients in the current study largely had early manifest disease with a broad range of C4a levels.

This is highlighted by the circled area. Shown in the table on the right, CSF C4a levels correlate with several measures of clinical severity, including both motor and cognitive function. These measures are part of the standard clinical outcome measured in HD. Slide 11 shows that synapse loss can also be measured in Huntington's patients. In the graph on the left, synapse number is measured with a PET ligand in living Huntington's patients. It shows that even in pre-manifest disease, which is the tan bar in the middle, there's been significant loss of synapses. At this early stage of disease, prior to the onset of overt symptoms, there's little loss of neurons. Supporting a finding from other neurodegenerative disorders, that synapse loss occurs prior to the loss of neurons.

Now in the graph on the right, as disease progresses from pre-manifest to manifest Huntington's, synapse loss correlates with functional decline, as measured by a standard unified Huntington's rating scale or the UHDRS. Synapse loss is an important feature of disease progression. Shown in slide 12, preclinical studies in animal models of Huntington's disease have linked complement activation to synapse loss. On the left, systemic treatment of animals with ANX005 against C1Q blocks complement deposition on synapses. On the right, by blocking complement activation in these animals, we've protected against the loss of synapses over a 1-month treatment period. Treated animals end up with more synapses than control. In summary, on slide 13, complement activity is increased in Huntington's patients along with synapse loss and is correlated with functional decline prior to the loss of neurons.

Inhibition of C1q in preclinical models prevents synapse loss and protects neurons. Now I'm passing it on to Dr. Sanjay Keswani, our Chief Medical Officer.

Sanjay Keswani
CMO, Annexon Biosciences

Great. Thank you, Ted. I'm happy to present firstly the demographics for our Phase II trial, as well as safety and target engagement data. Moving to Slide 15, this slide illustrates those baseline characteristics. Of note, our patients were primarily early manifest HD patients, and their demographics were consistent with prior natural history cohorts, including the TRACK-HD cohort, which for reference is in the column on the right-hand portion of this slide. In particular, the cohorts were fairly well-matched for key prognostic factors of progression such as age, CAG repeats, and baseline clinical scores. Moving to Slide 16, this shows our safety data of 005, which is our intravenous anti-C1q antibody. Chronic dosing of 005 was generally well-tolerated. We essentially did an interim analysis on all patients who received at least one dose of 005, so that comprised 28 patients.

The majority of the adverse events were related to the infusion reaction associated with the first dose on day one, and these reactions were essentially limited to the skin, specifically transient skin rashes. 5 patients discontinued ANX005 treatment, two of them for non-drug related reasons, and three of them due to 2 SAEs and one drug-related adverse event. With respect to the 2 SAEs, this included one individual who had symptoms and signs of mucocutaneous lupus, which resolved after stopping drug. As well as a case of idiopathic pneumonitis that stabilized post-dosing cessation, with follow-up ongoing. There were no deaths and no serious infections in this study. Moving to slide 17, this shows our target engagement data. Of note, we measured C1Q target engagement in both blood and CSF. The CSF data is reflected on this slide.

Of note, we saw full target engagement in both blood and CSF for the entire treatment period. This was with the dosing regimen that was utilized in the Phase II study of 100 milligrams per kg dosed every two weeks. On the left graph, one can see that we achieved robust drug levels in CSF in HD patients. On the right, we see full target engagement, the blue line representing free C1Q levels. Now, of note, the first time point for the lumbar puncture was at six weeks, but our expectation is that full target engagement was achieved earlier than six weeks, closely resembling our blood target engagement data, where we saw full target engagement within a few hours. Okay, now going to move to our Phase II trial, clinical NfL data.

Before I do that, and this is outlined on slide 19, just wanna give a quick background on the clinical scores they utilized to measure HD progression, specifically the Composite UHDRS or cUHDRS, which was a scale proposed by an industry academic consortium in 2017 on the basis of analysis of natural history data for more than 1,600 patients with early Huntington's disease. cUHDRS is a composite score that's composed of four constituent domains. The total motor score, which is the top right-hand portion of the slide, which measures motor function, total functional capacity, which measures activity of daily living, and two scales that measure cognition and specifically cognitive processing, the Symbol Digit Modalities Test and Stroop Word Reading. Moving to slide 20, natural history data demonstrate consistent decline in the Composite UHDRS.

This includes data comprising over 1,500 patients with early HD, as well as decline in constituent domains over time. Specifically, the composite declines by about 1 point per year in early HD patients, and all 4 constituent domains consistently decline over time, with spontaneous improvement being unusual. Here on the slide, we have data from the TRACK-HD natural history cohort, which demonstrates declines in each of these 4 constituent domains. For reference, the red dots represent HD patients and the blue-green dots represent age-matched healthy controls.

As you can see, in each of these 4 domains, there's progressive decline over time. I should note that for the total motor score, an increase in score is worsening of function, as opposed to a decrease in score representing worsening in the other 3 scales. Moving to slide 21, this shows our data for the overall cohort for Composite UHDRS.

On the left, we show change from baseline for cUHDRS for all time points through 24 weeks. Of note, 24 weeks was the length of treatment duration in this study. As one can see, clinical function in this overall cohort was fairly well-maintained, as opposed to the blue shadow, which represents natural history data from the 2017 Schöbel paper. In other words, clinical function seemed to be maintained in the overall cohort as opposed to the expected decline predicted from natural history data.

On the right, we're looking at the data in another analysis which just relates to change from UHDRS baseline at the last time point, specifically at week 24. Here, we see just over half of patients had improved from their baseline, specifically 56% of all patients. Again, spontaneous improvement would be considered unlikely on analyzing natural history data.

Moving to slide 22, we then performed sub-analyses of patients according to their baseline complement activity. As Ted had referenced earlier in this presentation, our mechanism of action, C1Q, is the initiator of the classical complement pathway. Hence, we would expect that patients with high evidence of classical complement pathway activity to be most responsive to our anti-C1Q drug. I'll now hand it over to Ted.

Ted Yednock
EVP and Chief Innovation Officer, Annexon Biosciences

Thank you, Sanjay. As shown in slide 23, as mentioned before, there is prior evidence of elevated complement activity in Huntington's patients. In the graph on the left, approximately half of the patients showed elevated levels of C4a higher than controls, and these results were true in 2 separate natural history cohorts of patients. In the graph on the right, in the current study, Huntington's patients showed a similar range of C4a in their CSF at baseline. We reasoned, as Sanjay mentioned, that patients with higher levels of C4a may respond differently to complement inhibition.

In slide 24, we used baseline CSF levels of C4a normalized to baseline C4 as a way to divide the Huntington's cohort into 2 populations. Those with high baseline levels of complement activity being above the median value, and those with low complement activity being below the median value.

Importantly, C4a/C4 is an objective biomarker of complement activity. It was not examined until the end of the study, so patients, investigators, and the sponsor were blinded to C4a/C4 levels throughout the study. Also importantly, other baseline characteristics were well balanced between the groups, including age, CAG repeats, and baseline disease score. The subsequent slides will compare the two subsets in functional measure following treatment. Back to you, Sanjay.

Sanjay Keswani
CMO, Annexon Biosciences

Great. Thank you, Ted. Now we're on slide 25. As Ted mentioned, we analyzed patients with a high C4a/C4 ratio, which is illustrated by the green line, as well as patients with a low C4a/C4 ratio, which is illustrated by the blue line on this graph. Now, of note, we saw a difference in response between these two lines or between these two patient cohorts. Specifically, those with a high ratio showed improvement from baseline, whereas those with a low ratio had decline that was roughly similar to what would be predicted by natural history. That's in that blue shadow. The difference between these two lines was statistically significant with a p-value of 0.045.

As Ted mentioned, the two groups, the high and the low ratio groups, were fairly well-matched with respect to key prognostic factors for progression such as age, baseline NfL, and CAG repeats. As Ted also pointed out, the C4a/C4 ratio is an objective biomarker that was blinded to patients, investigators, and sponsors, so-called triple blinding. Hence it would be unlikely that the effect we're seeing is due to a placebo effect, as one would expect this effect to not disproportionately affect the high ratio group. In addition, our a priori hypothesis was that patients with excess complement activity would respond best to our drug. Moving to slide 26. Confirming the veracity of this efficacy signal, we also observed improvement in three of the four constituent domains, with the high ratio group performing superiorly to the low ratio group.

This specifically relates to SDMT, a measure of cognition, which is the top left of this slide, the total functional capacity on the right, which measures activities of daily living, as well as the total motor score on the bottom right. Of note for the total motor score, we saw a p-value of 0.001 with respect to the difference between the low and the high ratio groups. Again, with respect to TMS, a better score is a smaller score. The arrow is downwards for TMS. We did not see separation of these two cohorts for SWR or Stroop Word Reading. The SWR is known to be a relatively insensitive scale that does not change much over a short period of time. Moving on to slide 27.

This is looking at the data with the second analysis that I talked about, which is the change of the UHDRS from baseline just at that last time point, specifically at week 24 at the end of treatment duration. Here we see that, again, there is a superior response in the high ratio group, with 75% of patients improving from their baseline versus 36% improving in those individuals with a low C4a ratio. Essentially double the effect size in the high ratio group. The difference between these two groups was again statistically significant with a p-value of 0.03. I'm now going to move on to the analysis of our NFL data, and this related to a cohort size of 16 patients, where we measured NFL in both blood as well as CSF.

On slide 29, we have our plasma NfL data. Here we saw essentially no change of plasma NfL from baseline at the 6-month time point. This compared to a 3.6% increase in NfL as predicted by natural history. On slide 30, we have the CSF NfL data. 005 was associated with a numeric increase of 9.8% at week 24. This compared with a range of 7.3%-19% with respect to NfL increase over this time period. Roughly in the same ballpark of NfL increases with respect to natural history over this time frame. Our assumption is that we would likely have needed to treat these patients for longer than 6 months to see an impact on NfL.

As Ted mentioned, synapse loss happens relatively quickly and precedes neuronal axonal loss, the latter being the main producer of NfL. With that, I'm going to hand it to Doug to close the session.

Douglas Love
President and CEO, Annexon Biosciences

Great. Thanks, Sanjay, Ted and Jim. Really nice job. Thank all of you for your attention today. As you've heard, we're quite encouraged by the data from this interim readout from our ongoing HD Phase II study, which we'll summarize with a few observations. First, our scientific platform of preserving synapses to drive functional improvement has been extensively researched with consistent outcomes in animal models in an array of acute and chronic neurodegenerative indications. This research underpins our approach in the clinic. Second, ANX005 appears to be a strong anti-C1Q drug candidate in that it has been generally well tolerated and robustly inhibits C1Q in both serum and CSF. Third, the interim HD data from this trial appears to support a growing body of evidence that blocking C1Q can provide meaningful clinical benefit to patients suffering from devastating diseases.

In this initial HD dataset, blocking C1Q protected clinical function in the overall patient cohort at six months and was consistent across both the composite measure as well as its subdomains. Blocking C1Q also provided a statistically heightened improvement in patients with excess complement activity at baseline versus those with lower complement activity. As Ted and Sanjay pointed out, it's important to note that these two groups were well balanced at baseline and that the cohorts were triple blinded, and that neither the patients, investigators, nor Annexon were aware of baseline complement levels. It's also worth noting that we have extensively researched the role of C4a and excess complement activities for purposes of potentially ferreting out differentiated patient responses to our approach.

Indeed, we most recently published on the role of excess complement activity in Huntington's disease last fall, and we're currently using this approach in two autoimmune indications, warm autoimmune hemolytic anemia as well as lupus nephritis. Fourth, the interim HD dataset is the second demonstration of anti-C1Q approach driving important clinical responses. Indeed, we previously saw meaningful clinical benefit in our placebo-controlled GBS proof of concept trial, and thus we're encouraged by the growing body of support for our anti-C1Q approach. Fifth, as it relates to NfL, the levels remained generally unchanged over the six-month treatment period. Our thinking is that a longer treatment period is likely required to see a decline, given that synapse loss and improvement in synaptic function occur prior to neuronal loss and NfL changes.

Finally, with all of that, we certainly appreciate this is an open label trial for six months and that a well-controlled trial will provide the definitive answer here. In other words, we appreciate that more work is to be done to fully answer the role of anti-C1Q in Huntington's disease. Nevertheless, we're excited about what we've seen thus far, and we look forward to continuing the journey of assessing ANX005 as a potential disease modifying approach to treat patients with Huntington's disease. Turning to slide 33. These HD data tick off what we believe will be a meaningful year ahead at Annexon. This HD trial is just one of multiple clinical studies underway for ANX005 based on its differentiated mechanism of action. We are also advancing both ANX007 and ANX009 in clinical trials.

We further have an active research organization to further enrich and expand our pipeline in autoimmune, neurodegenerative and ophthalmic diseases. Again, tackling all three therapeutic areas in parallel, leveraging synergies and balancing risk and value creation. With the compelling early data in ANX005 in both Huntington's disease and GBS, and 7 clinical readouts anticipated over the next two years, as well as a strong balance sheet to fund our operations through key clinical milestones, we're well positioned to deliver on the promise of Ben Barres' early discoveries and in bringing important therapies to scores of patients in need. To close, I believe 2022 will be a transformational year, and we are very much looking forward to reporting more progress in the months to come. With that, we'll now open up the lines to take your questions. Thank you.

Operator

Thank you. As a reminder, to ask a question, you will need to press star one on your telephone. To withdraw your question, press the pound key. Please stand by while we compile the Q&A roster. Our first question comes from Phil Nadeau from . Your line is now open.

Phil Nadeau
MD and Senior Biotechnology Research Analyst, TD Cowen

Good afternoon and happy New Year. Thanks for taking our questions. A few from us. I guess first on the safety profile, can you talk a bit more about the SLE in idiopathic pneumonitis that was observed? Were those thought to be a consequence of complement inhibition? I guess, how were they assessed to be drug-related?

Douglas Love
President and CEO, Annexon Biosciences

Yeah. Hey, Phil. Good question and Happy New Year, and thanks for joining us this afternoon. Yeah, as you know, C1Q deficiency has been associated with lupus. We anticipated that we could see this. However, we were encouraged by the fact that it was resolved once we withdrew drug. I'm gonna turn over to Sanjay and Ted to maybe elaborate on your question.

Sanjay Keswani
CMO, Annexon Biosciences

Great. Thanks, Phil. With respect to the case of lupus, this is a case of mucocutaneous lupus. Specifically, this patient had onset of mouth ulceration as well as skin lesions compatible with lupus. Of note, post-drug cessation, these symptoms actually resolved. That's actually consistent with what we know about congenital C1Q deficiency that Doug alluded to with respect to those patients also having their symptoms and signs are reversed when C1Q is actually replete, in that particular case with fresh frozen plasma. Specifically, we were monitoring for lupus, and in this particular context, detected that case and that resolved with drug cessation.

In terms of the second case of idiopathic pneumonitis, it was really called idiopathic because it was difficult to ascertain a causal relationship with respect to anti-C1q being mechanistically related to the pneumonitis case. This was something that we had not expected. We're not sure, quite frankly, if we're gonna see this in future studies. Temporally, it was actually related to drug onset or drug treatment, and hence it was designated as related. That patient has stabilized with respect to their lung function, and we continue to follow that patient.

Phil Nadeau
MD and Senior Biotechnology Research Analyst, TD Cowen

Perfect. That's very helpful. Then a couple of efficacy questions. In terms of the natural history data, for the primary endpoint, can you talk about what the standard deviation of the changes is on each domain over six months? How much variability would you anticipate in a natural history population kind of over the duration of the study?

Douglas Love
President and CEO, Annexon Biosciences

Yeah, good question, Phil. Sanjay, you wanna take that?

Sanjay Keswani
CMO, Annexon Biosciences

Sure. Actually, this is denoted on this slide, which relates to the TRACK-HD cohort.

Douglas Love
President and CEO, Annexon Biosciences

Slide 20.

Sanjay Keswani
CMO, Annexon Biosciences

Sorry.

Douglas Love
President and CEO, Annexon Biosciences

Yeah, sorry, Sanjay.

Sanjay Keswani
CMO, Annexon Biosciences

Slide.

Douglas Love
President and CEO, Annexon Biosciences

Slide 20. Yeah.

Sanjay Keswani
CMO, Annexon Biosciences

That's right. Slide 20, yeah. The four graphs actually relate to the progression of the four constituent domains of the composite UHDRS. Associated with that are standard deviations. What one can actually see it in each of them. Don't know if that helps, Phil.

Phil Nadeau
MD and Senior Biotechnology Research Analyst, TD Cowen

Yeah. I guess what I'm asking, is it generally linear for over the first 6 months? It seems like there's kind of a gap between, I guess, month 0 and 12. Should we just interpolate kinda what happens before then?

Sanjay Keswani
CMO, Annexon Biosciences

That's right. Yeah. We have datasets from 4 different natural history cohorts. In fact, there was a meta-analysis by Schöbel et al. in 2017. We did interpolate to some extent with respect to six-month data versus some of these longer periods of duration, which are typically one year plus. There was also some natural history data which was six months in duration. All of them relate to this roughly one-point decline over a year or 0.5 points in composite UHDRS over a six-month time period. The declines that we see in all these constituent domains as well.

Phil Nadeau
MD and Senior Biotechnology Research Analyst, TD Cowen

Perfect. The last question from us is in terms of the low complement versus high complement patients, were there any other notable differences at baseline between those two groups? Was one more severe, one further along in their disease or anything notable, in addition to the difference in complement levels?

Sanjay Keswani
CMO, Annexon Biosciences

Yeah, I'll start.

Douglas Love
President and CEO, Annexon Biosciences

Okay.

Sanjay Keswani
CMO, Annexon Biosciences

You should follow up on this. They were actually pretty well matched. We looked specifically at known prognostic factors for progression. They include age, number of CAG repeats, their baseline clinical scores for composite as well as the four constituent domains, as well as CSF and plasma NfL levels as well. There were some minor differences, but overall are pretty well matched. I don't know, Ted, if you want to extrapolate on that.

Douglas Love
President and CEO, Annexon Biosciences

No, I think you've covered it well, Sanjay.

Phil Nadeau
MD and Senior Biotechnology Research Analyst, TD Cowen

Perfect. Thanks for taking our questions.

Douglas Love
President and CEO, Annexon Biosciences

Thanks, Phil.

Sanjay Keswani
CMO, Annexon Biosciences

And-

Phil Nadeau
MD and Senior Biotechnology Research Analyst, TD Cowen

Appreciate it.

Operator

Thank you. Our next question comes from Anupam Rama from JP Morgan. Your line is now open.

Anupam Rama
Managing Director and Senior Equity Research Analyst, JP Morgan

Hey, guys. Thanks so much for taking the question, and Happy New Year. What preclinically or otherwise gives you confidence in NfL kind of declines with longer-term treatment? Are we really thinking about stability on NfL now, as a win in the context of how natural history progresses? Thanks so much.

Douglas Love
President and CEO, Annexon Biosciences

Yeah, maybe I'll start.

Sanjay Keswani
CMO, Annexon Biosciences

Well-

Douglas Love
President and CEO, Annexon Biosciences

Turn it over to Ted. You know, Phil, we were able to show reductions in NfL both in our Huntington's disease models, which is a very aggressive fast-acting model, as well as in a SOD1 ALS model. Preclinically, we have some reason to believe that over time you can indeed reduce NfL, but it does appear to play out longer than a six-month period of time. I'll turn it over to you to elaborate on all of that.

Ted Yednock
EVP and Chief Innovation Officer, Annexon Biosciences

Yeah. I'll just add that was the Huntington's mouse model, the R6/2 model, very, very aggressive. We began treating early in the disease process and then treated throughout, well, basically two months, which takes you to a rather advanced stage of disease, again, in this very rapid mouse model. In covering that length of disease progression in the mouse, we were able to see a significant reduction in NFL. You could assume then with patients in a who are well into their disease process in a much more slowly progressing disease, that it would take longer to see that kind of impact.

Anupam Rama
Managing Director and Senior Equity Research Analyst, JP Morgan

Thanks so much for taking the question.

Douglas Love
President and CEO, Annexon Biosciences

Thank you, Arthur. Happy New Year.

Operator

Thank you. Our next question comes from Joseph Stringer from Needham & Company. Your line is now open.

Joseph Stringer
Managing Director, Needham & Company

Hi, everyone. Thanks for taking our questions. Happy New Year. Two from us. Just on the 16 patients with the NFL data, comparing to the 23 patients on the UHDRS clinical function score, I suppose, is there any reason to believe that you know, the seven patients there could you know, we saw the NFL reductions for those. Is there any reason to believe that it would be different than sort of the 16 that you're showing? Or I guess, of the 16 you're showing, is there you know, are those stratified in any way in terms of high versus low complement activity? Then we have a follow-up with that. Thanks.

Douglas Love
President and CEO, Annexon Biosciences

Good question. Maybe I'll just kind of summarize to make sure and kick it over to Sanjay and Ted. Your question being, with the 16 patients, can we see a difference between high and low complement levels? And is there any reason to believe that the additional patients coming in to the study that you would see an overall change in the scores here? Gentlemen-

Joseph Stringer
Managing Director, Needham & Company

Yeah.

Douglas Love
President and CEO, Annexon Biosciences

I'll turn over to you two to respond. Thanks, Joseph.

Ted Yednock
EVP and Chief Innovation Officer, Annexon Biosciences

Yeah. I don't think that there would be. Just looking at the variance in the population, there's quite a bit of overlap between all the different patients. With respect to low versus high complement, we did not see anything significant in that regard either. I don't see these seven patients changing the ultimate outcome.

Joseph Stringer
Managing Director, Needham & Company

Got it. Just a follow-up. I know this is the initial data, but maybe just your early thoughts on the next steps in how to proceed here with additional studies. Would you be taking a look at or focusing more on this high versus low complement patients with high versus low complement activity going forward? Thanks for taking our questions.

Douglas Love
President and CEO, Annexon Biosciences

Thanks, Joey. Well, it's certainly intriguing what we've seen with the high and low patient population. That being said, we saw improvement in both populations, and so we'll continue to assess that. We're not gonna make any decisions on the Phase III program in any form until we see the final dataset in Q2, which will include the 3-month off treatment period. I will note, however, the difference between what we see clinically and on the NFL measures is that we do have the full dataset of all 23 patients that completed the clinical study, the 6 months on treatment side for the clinical piece. I don't know if Sanjay, you or Ted want to elaborate on that at all.

Sanjay Keswani
CMO, Annexon Biosciences

Yeah.

Ted Yednock
EVP and Chief Innovation Officer, Annexon Biosciences

Nothing further.

Sanjay Keswani
CMO, Annexon Biosciences

I think at this moment, we're kind of digesting this with the benefit of our key opinion leader relationships. I think we have some interesting options going forward. I think you're alluding to a precision medicine approach, and clearly that's something we're utilizing across the board in Annexon. By focusing on the right patient subset, potentially we should see high probability of success. As Doug mentioned, we do have the ability to enrich potentially for responsiveness here utilizing this high C4a versus low ratio. I think the other thing to note is that the clinical function improved quite quickly. It also gives options down the road in terms of future clinical studies with respect to adaptive designs.

One could treat for a period of time and then make decisions based on that initial response. Hopefully that's helpful. It's clearly food for thought for us at the moment.

Joseph Stringer
Managing Director, Needham & Company

Great. Thank you.

Operator

Thank you. Our next question comes from Tazeen Ahmad from Bank of America. Your line is now open.

Tazeen Ahmad
MD and Senior Biotechnology Research Analyst, Bank of America

Hi. Good evening. To follow up on NfL, so Doug, should we expect to see any impact on NfL when you release the full dataset in 2Q? Just based on what you said in your prepared remarks it seems like it does take some time, but how much time do you think would be needed? If you don't see an impact on NfL, how would that potentially impact your decision to move forward to a pivotal study?

Douglas Love
President and CEO, Annexon Biosciences

Yeah. Hi, Tazeen. Happy New Year. Good questions. You know, I think it's important to bear in mind that NfL is a biomarker to assess neurodegeneration. Ultimately, our objective is to slow the rate of progression clinically in neurodegeneration, or in this case, show some improvement for patients. That is ultimately the final objective for us and all companies with regard to their neurodegenerative programs. That, that's gonna weigh quite importantly in our decision as we continue to move this program forward. secondly whether or not we will see a change on NfL when we have the final additional patients, it's just really difficult to say. You could see that there was some variance at each of the time points, and so we'll wait to get the final data before we opine on anything more with regard to that.

I think it's important also to note with regard to NfL is that, it appears to be relatively stable or consistent, and so patients are not getting worse. I think that's a really important concept for people to understand as we assess NfL as a decision-making tool. Coupling that with the clinical improvement we think overall we're encouraged by how all of this has come together.

Tazeen Ahmad
MD and Senior Biotechnology Research Analyst, Bank of America

As it relates to change in UHDRS, what's FDA's position on what you would need to be able to show in order for that to be viewed as a marker of efficacy in HD? Is there a particular % improvement that the agency has indicated that you'd need to show?

Douglas Love
President and CEO, Annexon Biosciences

I'm gonna turn that over to Sanjay to tackle.

Sanjay Keswani
CMO, Annexon Biosciences

Yeah. The dogma with respect to neurodegenerative disease, including HD, is prevention of further decline. Obviously we're quite interested in our results which show an improvement above baseline. With respect to the first paradigm, i.e., remediation decline, clearly other companies, specifically those who have had discussions in terms of approval endpoints, were guided to some extent by the choice of their endpoints and how they powered their studies for the Phase III program, specifically for tominersen. They're essentially looking at just over a point in terms of composite UHDRS change over time being clinically meaningful. I believe it's 1.2 points. Clearly we'll have our own discussions with health authorities in terms of what would be regarded as meaningful changes in these endpoints.

Tazeen Ahmad
MD and Senior Biotechnology Research Analyst, Bank of America

Okay. On safety with the instances of SLE and IP that were observed, is there any reason to think that the other studies that you have underway for the other indications for ANX005 might see the same side effects, or is this something that you think would be limited to HD patients?

Douglas Love
President and CEO, Annexon Biosciences

Yeah. Back to you on that, Sanjay.

Sanjay Keswani
CMO, Annexon Biosciences

That's a really good question. Specifically we saw this one case of mucocutaneous lupus with our drug candidate zero-zero-five, which was our intravenous drug candidate. We have a fairly wide range of drug candidates, as you know, that we're utilizing with our other indications, specifically our subcu drug candidate, which is zero-zero-nine. We also have an oral molecule coming up as well. Our sense is that the amount of target engagement we see just in the blood compartment may have a differential safety profile, specifically with respect to the induction of lupus versus zero-zero-five, which achieves rather complete C1q blockade throughout the body. Again, that's a hypothesis that we have at the moment, but that's our sense going forward with our other drug candidates in these other indications.

Douglas Love
President and CEO, Annexon Biosciences

With respect to different indications, we don't see anything particularly special about Huntington's disease for the development of lupus. That could be mechanistically related, and we'll have to see going forward. Importantly, it was something that can be monitored and appears to be reversible as it is in the genetic patients. Yeah, we don't see anything particularly special about Huntington's disease in that regard.

Tazeen Ahmad
MD and Senior Biotechnology Research Analyst, Bank of America

Okay. Thank you.

Operator

Thank you. Our next question comes from Pete Stavropoulos from Cantor Fitzgerald. Your line is now open.

Pete Stavropoulos
Director and Equity Research Analyst, Cantor Fitzgerald

Hi, Doug and team, and happy New Year's and congratulations on the data.

Douglas Love
President and CEO, Annexon Biosciences

Good to hear from you.

Pete Stavropoulos
Director and Equity Research Analyst, Cantor Fitzgerald

Likewise. On slide 21, 56% of the patients improved at week 24 on clinical function. Was there anything about these patients' baseline characteristics for those who improved versus those that did not such as baseline UHDRS independence score or CAP score?

Douglas Love
President and CEO, Annexon Biosciences

Yeah.

Sanjay Keswani
CMO, Annexon Biosciences

No, actually they're pretty well. Oh, Sanjay, sorry.

Douglas Love
President and CEO, Annexon Biosciences

Go ahead. Sorry. No, go ahead.

Sanjay Keswani
CMO, Annexon Biosciences

They were pretty well matched between the two groups, specifically high and low. The only real difference was actually their ratio, the C4a over C4 ratio. Our hypothesis is that was more akin to our mechanism of action, anti-C1q.

Pete Stavropoulos
Director and Equity Research Analyst, Cantor Fitzgerald

Okay. In terms of the AEs, I know you discussed them, but you know, can you give a sense of timing for when the subjects discontinued dosing after how many doses? Was there anything about the patient's medical history or background that made them susceptible?

Sanjay Keswani
CMO, Annexon Biosciences

Yeah. A really good question. In terms of discontinuation, it was roughly three months of dosing as the discontinuation time for that specific patient. We've been thinking carefully in evaluating any specific factors in that specific patient that increased risk with respect to development of lupus, specifically scrutinizing the titer of antinuclear antibody at baseline. That's something that we're looking at with respect to further screening or monitoring in our other studies. Specifically utilizing a slightly lower threshold with respect to ANA titers that would be acceptable for entry into the study. Apart from that, there was nothing remarkable about this patient.

Pete Stavropoulos
Director and Equity Research Analyst, Cantor Fitzgerald

All right. Thank you for taking my questions.

Douglas Love
President and CEO, Annexon Biosciences

Thanks, Pete.

Operator

Thank you. I am showing no further questions. I would now like to turn the call back over to Doug Love for closing remarks.

Douglas Love
President and CEO, Annexon Biosciences

Thank you, operator. Thank all of you. We appreciate your questions and tuning in with us today. As you hear, we're encouraged by the initial data presented today, and we look forward to sharing the full data from the study in the Q2 of this year. We want to wish you all a happy new year and have a great afternoon. Thanks.

Operator

This concludes today's conference call. Thank you for participating. You may now disconnect.

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