Good afternoon. This is Anna Marie Wagner, SVP of Corporate Development at Ginkgo Bioworks. As usual, I'm joined by Jason Kelly, our co-founder and CEO, and Mark Dmytruk, our CFO. We thank you for joining us and look forward to providing you with an update on the last quarter and full year of 2022. As a reminder, during the presentation today, we'll be making forward-looking statements which involve risks and uncertainties. Please refer to our filings with the Securities and Exchange Commission to learn more about these risks and uncertainties. We've got a packed agenda for today, but we'll follow our standard format, providing an update on our financial progress and guidance for the year, while also taking the time to dig deeper on our strategic priorities.
In particular, as we alluded to in our last call, today, we'll be providing more information on the downstream value potential we see at Ginkgo. We'll end with a Q&A session. We'll take questions from analysts, investors, and the public. You can submit those questions to us in advance via Twitter, hashtag Ginkgo results or email at investors@ginkgobioworks.com. All right, over to you, Jason.
Thanks, Anna Marie. We always start with this slide because our mission drives much of our long-term strategy and even many day-to-day decisions in the company. Very simply, we wanna make biology easier to engineer at Ginkgo. We do that by scaling our platform for programming cells. How does that work? An easy way to think about Ginkgo is that companies are outsourcing their research to us. In the biopharma industry, that would be called a CRO, a contract research organization. For a traditional CRO, biopharma companies they're normally outsourcing simple research work that they really just don't want to do. Think like running an animal study or synthesizing a chemical. Whereas when they're coming to Ginkgo, it's really to outsource work that they can't do themselves internally. They wanna access Ginkgo's automation scale, our data, other IP assets, again, that aren't available in-house.
You can see a comment here from one of our biopharma partners, Novo Nordisk CSO, Marcus Schindler, saying they are open to external partners who bring new and complementary expertise and talking about our unique capabilities in SynBio. That's a similar refrain we're hearing in discussions and mirrors what we saw in our large deals with Bayer last year as well. The most obvious example of an asset we have that our customers don't have internally is the scale of our automation. We've invested hundreds of millions of dollars to date to build out both physical hardware here in Boston, where I'm sitting today, as well as custom software to run our lab like a factory.
As you can see a video on the right here, of the newest technology that we're super excited to be integrating, the software and automation that's coming in via our acquisition of Zymergen that closed in October of 2022. For the potential customers listening on this call, this infrastructure is all available quickly to you as a service. I really like our no pipettes logo down here. You know, look, I spent five years during my PhD at MIT working at the lab bench with a pipette in my hand. There are brilliant scientists at our customers who are instead, you know, spending their time designing experiments are instead really running ultra-low throughput experiments by hand with pipettes.
It's clear to me that the future will be total automation of the lab work associated with cell engineering, and Ginkgo is really hoping to lead in making that happen. Biotech scientists should put down their pipettes and make use of Ginkgo's automated lab services to do their work. The last point I'll make on the foundry is that it gets better with scale. In other words, unit costs fall as our output in the facility goes up. This is, you know, something you traditionally see in manufacturing of things like microchips or cars, but you don't normally see this in R&D. By using Ginkgo services, we expect that year over year, the scientists at our customers will have more capacity, unlike those pipettes, they have that aren't getting any better. All of that automation generates something really important, data.
We call this data our Codebase, and because we retain rights to reuse the data generated when we do projects for customers, this asset grows each year. I'm sure you've been hearing a lot this year about new AI algorithms. The big secret is that these algorithms are mostly commodities. Everyone has access to largely the same tools, and what's really proprietary is the data you use to train the model. Ginkgo has built a very unique asset there in the biological space and is adding to it every day. Again, for our customers, these types of AI models are available to you as a service. Most companies in the biopharma space would keep an asset like this to themselves to develop their own drug pipeline.
Ginkgo is a services company, not a product company, and so you won't, you won't see a drug pipeline here. We wanna make this available to our customers. Mark will discuss our financial performance in a minute, but I wanna emphasize how proud I am of the team for adding 20 new programs in Q4, which took us to 59 programs for the full year, toward the high end of our guidance range. On the right, compare this to the Q1 of 2021, where we only added 4 programs. You know, this is a huge deal. Each new program at Ginkgo adds a combination of service revenue, downstream value, demand to drive the scale of our foundries and IP data assets, like I just mentioned.
The bulk of that program growth was driven by our penetration into the biopharma and ag industries, which you can see on the left side. Yep, this is awesome to see. These industries have large biotech R&D budgets, and they're some of the most valuable products in biotechnology. Overall, in 2022, we demonstrated diversification in both the markets we're signing up programs in and in the types of downstream value share we're closing. I think it's often underestimated how valuable that type of diversification is, especially for a services platform. This allows us to shift to where the action is. If there's a lot of demand in a certain area in pharmaceuticals, we can go there. A certain area in industrial biotech or ag, we can go there.
If the market conditions favor certain types of deals, whether it's royalties or milestones or equity or whatnot, we can move. I really am excited about the range of diversification we had in 2022. I think it was a really an amazing year for us that sets us up well. Biosecurity had another solid quarter, and we're very excited about that business transitioning towards longer-term recurring monitoring contracts like we've been doing at airports. Mark will talk about some of the biosecurity financial highlights coming up, and I'll dig into that business in my strategic section as well. We ended this year with over $1.3 billion of cash on the balance sheet, which provides us with a multi-year runway and is an important source of competitive advantage in this market environment.
All right, I'll hand it off to Mark now to go through the numbers. We'll dig deeper into some of the things we're focused on.
Thanks, Jason. I'll begin with the discussion of our cell engineering business. Before I dive in, you may notice on the slide that we're referring to cell engineering revenue instead of Foundry revenue, as we've done historically. We believe this is more reflective of the business and is the term we use internally. Even if it is a bit of a mouthful, we'll be updating our filings to refer to it in this way going forward, though we did not make this decision in time to get it incorporated into this 10-K. As Jason mentioned, we added 20 new cell programs to the cell engineering platform in the Q4 of 2022, which brought us to 59 new cell programs for the full year of 2022.
This represents 90% growth compared to the full year of 2021 and is a key outcome as we believe new programs are a critical driver of Ginkgo's long-term value. We supported a total of 96 active programs in the Q4 of 2022 across 54 customers on our platform. This represents substantial growth and diversification in programs relative to the 60 active programs across 30 customers in the Q4 of 2021. Cell engineering revenue was $53 million in the quarter, up 56% compared to the Q4 of 2021. Cell engineering services revenue, which excludes the contribution from downstream value share, was $36 million in the Q4 of 2022 compared to $21 million in the Q4 of 2021, an increase of 73%.
We saw a meaningful sequential increase in cell engineering services revenue compared to the Q3 of 2022, which demonstrates solid execution and platform scaling, including a contribution from the new Bayer programs. Cell engineering revenue was $144 million for the full year of 2022, an increase of 27% compared to the full year of 2021. Cell engineering services revenue was $106 million, an increase of 23% compared to the full year of 2021. Turning to biosecurity. Our Concentric offering continued to perform well in the Q4 of 2022, generating $45 million of revenue in the quarter. Biosecurity revenue for the full year of 2022 was $334 million, an increase of 66% compared to the full year of 2021.
Full year of 2022 biosecurity revenue exceeded our previously announced guidance and more than doubled the original guidance we provided back in March 2022, primarily due to the durability of COVID testing services through the year. Biosecurity gross margin was 33% in the Q4, an approximate 8 percentage point decrease from the prior quarter performance. The sequential decrease in gross margin percentage was driven in part by an inventory reserve for purchased products. Now I'll provide more commentary on the rest of the P&L. Where noted, these figures exclude stock-based compensation expense, which is shown separately. Starting with OpEx, R&D expense excluding stock-based comp increased from $55 million in the Q4 of 2021 to $113 million in the Q4 of 2022.
G&A expense excluding stock-based comp increased from $39 million in the Q4 of 2021 to $78 million in the Q4 of 2022. These operating expense items increased year-over-year as expected as we invested in our platform and various functions to support our growth, layered in the 4 acquisitions we closed in the Q4, and had relatively high consulting expenses, the latter of which we do not expect to continue at the same rate. For example, included in these numbers is approximately $26 million of one-time M&A and integration-related expenses.
R&D expense increased from $219 million in the full year of 2021 to $314 million in the full year of 2022, while G&A expense increased from $106 million in the full year of 2021 to $228 million in the full year of 2022. Included in these numbers, we incurred approximately $46 million of one-time M&A and integration expenses in the full year. As you think about 2023 R&D and G&A expenses, the Q4 of 2022 levels, excluding one-time costs, is a decent starting point. By the end of 2023, we'll largely phase out Zymergen-related transition costs for instance, certain G&A support functions, and we'll also make some targeted investments in the core business which could largely offset. Net loss.
It is important to note that our net loss includes a number of non-cash income and/or expenses as detailed more fully in our financial statements. Because of these non-cash and other non-recurring items, we look to adjusted EBITDA as a more indicative measure of our profitability. Adjusted EBITDA in the quarter was negative $80 million compared to positive $1 million in the comparable prior year period. Nearly half of this decline is attributable to the biosecurity segment as demand for COVID testing services declined. Full year 2022 adjusted EBITDA was negative $173 million compared to negative $106 million in the full year 2021. This decrease was driven by higher operating expenses year-over-year, partially offset by higher revenues. A full reconciliation of EBITDA is provided in the appendix to this presentation and in our earnings release.
Finally, CapEx in the Q4 of 2022 was $26 million, which was a sequential increase as expected, as we invested in foundry capacity and capabilities. CapEx in full year 2022 was $52 million, significantly below our initial expectations at the beginning of the year as we sought to optimize our capital efficiency. We expect CapEx to remain at similar levels in 2023. Regarding stock-based compensation, as a reminder, we provided extensive disclosure in our Q4 2021 earnings release a year ago relating to the GAAP accounting for the modification of restricted stock units issued prior to becoming a public company.
Our stock-based comp in the Q4 of 2022 was $111 million, a substantial step down sequentially as the GAAP impact of our pre-public company restricted stock units declined, and we expect a further normalization in 2023. Before I move on to 2023 guidance, I'd like to make two comments relating to the 2022 financials. First, we graduated from emerging growth company status shortly after going public, this is our first-year filing on an accelerated timetable, 30 days earlier than last year. While we believe our numbers are finalized, we and our auditors at EY need some extra time to complete procedures and documentation. We are submitting a notification of late filing and intend to file our 10-K as soon as possible, but in any event, within the 15-day automatic extension period.
Second, this is also our first year in which we are required to formally report on our internal control environment under Sarbanes-Oxley Sections 404(a) and 404(b). While we did assess a material weakness in our SOX control environment, it had no bearing on the accuracy of our financial statements. The weakness was principally due to, 1, the fact that we rely extensively on external resources and specialists to supplement our internal team. 2, the level of documentation we need to produce in order to evidence the operation of certain controls. This is something we believe can be remedied in 2023 by expanding the team, further training, and investing in more automation of our data flows. I'd like to thank the team for the tremendous work done to date.
SOX is not an easy lift for a new public company. The progress we've made from where we were in Q1 to Q4 has been substantial. All during a year in which we grew the business significantly and completed multiple acquisitions. Now, I'd like to provide some commentary on our outlook for the full year 2023. We expect to add 100 programs in 2023. This guidance reflects another year of strong growth, 69% year-over-year. We remain excited about our new program pipeline despite the macro environment, and in some cases, that environment might even work to our advantage as customers look to outsource their R&D efforts. We expect total revenue for the full year 2023 to be at least $275 million.
Our cell engineering revenue guidance is at least $175 million, which we expect to ramp meaningfully over the course of the year and excludes the impact of any downstream value share revenue. I want to pause here because our employees are listening to this call. Although this represents 65% growth in services revenue from 2022, we know that we have even more aspirational goals and that our internal targets are higher than this. However, maintaining credibility with the investment community is very important to us, and we want to commit to an outlook that reasonably reflects the business as we see it today. We'll continue to remain nimble with operating expenses and cash preservation in this environment.
I also want to be clear that we're still working toward the achievement of downstream value share in 2023, including additional Cronos milestones. Given the lumpiness of this potential revenue, we are only prepared to give services guidance at this time. To that point, our guidance of at least $175 million of cell engineering services revenue represents 65% growth over the full year of 2022, and our Q4 2022 performance is supportive of our growth expectations for that business in 2023. Our biosecurity guidance range is at least $100 million. Importantly, we expect nearly half of this revenue to come from emerging product lines that are expected to be more recurring in nature, such as federal and international partnerships, supporting pathogen monitoring and biosecurity infrastructure development beyond just COVID-19.
For the remaining half of the revenue, that primarily comprises our K-12 COVID testing businesses. We are approaching guidance similar to how we have during the past couple of years. Our guidance includes business that we have visibility into, specifically testing commitments that we expect to last through the remainder of this school year. We have included only a marginal contribution from the K-12 COVID testing business in the H2 of the year. Although we do have opportunities to continue working with state governments on testing services and other biosecurity projects. We reiterate the usual caveat that even where we have known contracts, our K-12 COVID testing business is inherently uncertain. In summary, we are pleased with our overall progress and outlook. We had a solid quarter of cell engineering execution and expect strong program growth and services revenue growth in 2023.
Biosecurity continues to perform well and evolve as we expect a meaningful contribution from more recurring revenue streams in the coming years, and the company's total cash position of over $1.3 billion remains strong.
Thanks, Mark. Before I move on to our strategic section, I wanna comment on our guidance approach for the year. Last year we got a fair bit of feedback that people didn't like us combining services and downstream value share together as part of the cell engineering revenue we are guided to in 2022. As you've seen with Cronos over the past year, the timing of downstream value share, for example, those milestone achievements we received, can be unpredictable. In 2023, we're going to guide only to services revenue to take some of the quarter-to-quarter noise out of the story. Also, I want to reiterate something Mark said about what we're aiming to do this year in the cell engineering business.
Although a target of at least $175 million in cell engineering services revenue does represent a 65% increase over 2022. The Ginkgo team listening in today knows they're expected to deliver on even higher numbers than that. The reason we're pushing higher there is that improving efficiency in converting our platform output into cell engineering services progress is the number one internal focus for Ginkgo in 2023. To give you context, that wasn't our primary focus in 2022. In 2022, we were really focused on shoring up our demand for our services. I wanted to make sure we were able to build the sales infrastructure and onboarding program, onboarding systems, to handle many more program launches per quarter.
I think we did see that, and I wanted us to expand into the larger biotech R&D budgets of both the biopharma and ag industries. I'm super happy with how that went in 2022, and we're gonna keep pushing there. Demand is now coming in nicely. In 2023, the big challenge for us is all about driving efficiency in the platform to deliver on that demand while we keep costs down on running Ginkgo. How will we drive that efficiency? First, via standardization. You might have seen us talk about Ginkgo Enzyme Services. This is a good example of this. We're trying to offer a more standard offering to the customer so that the work we get is actually easier for us to drive internally, more efficiently.
That's good for the customer too, it makes the projects more reliable. However, in the market today, the majority of customers are still looking for, you know, really customization in their cell engineering. Most important for us is to drive improved operational efficiency across all our projects and to drive up our utilization of the facility across all our projects. I included a few snapshots, so you can get, you know, a little in the weeds here, from our most recent weekly business review meeting to give you a sense of how we approach this, right? These are 3, you know, out of 66 slides in that deck. On the top you can see variance versus plan on which is something, we measure internally against our, what we call our rate card output.
This is basically a measure of billable work, and each of those columns is one of the teams at the company. We spend a lot of time talking about the teams on the right side of the chart. you know, where are they getting stuck? Is it a planning problem? Is it a demand problem? On the middle chart, you can see, you know, a similar calculation broken out by program. Each one of those dots is a program we're running. The size is sort of how, on an absolute basis, how much is going through it. Ideally, the programs are on the 45-degree line where the performance of the program matches the plan. We spend a lot of time on the ones that have the largest deviation.
Down on the bottom, you can see a snapshot of what we might do to look ahead and try to address bottlenecks on the Foundry. The rows there are individual Foundry teams. You can see in red areas, where we are over capacity, that might be a bottleneck. If we relieve that bottleneck, it might allow us to tap into some of the spare capacity, you know, in the greens. The most important point here, though, overall, is we treat our labs and infrastructure like a factory. You know, we look at Overall Equipment Effectiveness and people utilization. To solve bottlenecks, we leverage tools like, you know, staggered shifting and S&OP implementation, performance boarding, all supported by proprietary software and automation running at a unique scale. Approaching biotech R&D like running a factory is really the secret sauce of Ginkgo.
I don't know anyone else doing anything like it at our scale, and we will be leveraging the heck out of that, as we try to, you know, hit our goals in 2023. Moving on to the strategic topics. First, downstream value share is a critical value driver for Ginkgo and has significant financial potential for us. I wanna spend some time digging in on that topic. Second, you'll see that through 2022, we grew a ton in biopharma. Super excited about that. We will continue that. I'm gonna talk about our strategy there. Finally, we're projecting biosecurity revenue to decline in 2023, given the end of the COVID public health emergency in the U.S. in May.
However, you'll also see a significant increase in what we would describe as more infrastructure-like programs, and we expect this to translate to more recurring fee-based revenue, mix in 23 and beyond. We don't look at biosecurity as a COVID business. We never have. It's not something we plan to stop doing, so we're gonna talk about it. Okay, let's dive in. You know, this page is just a quick snapshot of our business. Programs are really the core unit economic of Ginkgo's business. They drive both upfront fees and downstream value.
As you'll see on the left side of this slide, our program mix has changed quite a bit over the past year, driven entirely by third-party customers. As I mentioned, we're penetrating more traditional biotech end markets like biopharma and ag, and I'm really happy how our program mix has diversified in the last year. Those programs each come with upstream services revenue, including cash and non-cash consideration, which you can see on the top right is expected to accelerate this year. Programs also come with downstream value share. You know, it's not as visible on the financial statements today, but it is a large portfolio of potential future value that we're building. Let's dig deeper on that downstream value share. There are three categories of downstream value share, royalties, milestones, and equity.
Royalties are the most common, they cut across all of our verticals, in other words, all the different markets. Royalty rates will often reflect the margin structure of that industry. In other words, you know, we'll see higher royalty rates in higher margin industries and lower ones in lower. Rates also vary by the program stage. They vary by our leverage in that industry and our role in the full value chain. We'll show some illustrative numbers on the next slide, but it does vary program to program. You'll notice on the right-hand side, significant growth in the last year in programs that have milestones. In other words, we're signing up more deals with milestones.
We're increasingly pushing for these types of deals, in order to be compensated for technical success and to pull forward value when a customer's product has a longer time to market. You'll see that, you know, particularly in the biopharma space, and in ag. Finally, equity has been a useful tool for us historically, but it's becoming a less common form of downstream value share for Ginkgo. It does give us some diversification benefit. We gain exposure to the whole company versus single product. However, as our growth has been driven by third-party customers and traditional biotech customers, royalties and milestones have just become a much greater part of our portfolio. That's really the big takeaway on this slide.
You'll see about 60% of our 2022 new programs have some combination of those two structures. That compares to less than a quarter of our programs two years ago. Okay, downstream value is hard to model even when you have perfect information, but it does have you know, we think it has significant financial value. We wanted to share more data on this than we have previously, you all have better tools to model it. With royalties, you'll see a chart here, showing how our royalty rates vary by industry and type of project in that industry, ranging from low single digits to double digits on product revenues.
Milestones, on the other hand, are actually much easier to quantify for you, cause we can just add up the dollar potential in all our contracts. We've now done enough of these that we're not, like, kind of giving away individual contracts that don't want us to, so we were able to aggregate this. We added $2 billion of aggregate cash revenue potential from milestones in 2022, compared to about $200 million in 2021. I wanna be clear, you know, just over $1 billion of that comes from our partnership with Selecta, which we shared previously in a press release. You know, listen, we're not trying to convince you that we're gonna get the full $1 million or even a significant percentage of it.
You can think of this as a bit like modeling a drug pipeline where you have to factor in commercial success for us to get those commercial milestones in particular, you know, the dark green ones. What I like about Ginkgo is that those 2022 milestones are across 23 programs. Again, we are diversifying our portfolio in ways I think are healthy for the business. Finally, we aren't going to attempt to provide valuations for our equity stakes in private companies, but we have received equity for downstream value from 14 companies, in addition to others where we've been paid with equity for cell engineering service fees. That's all potential value, and we're excited about that because of the rate of new program growth.
We're adding a lot of new potential value every quarter. However, eventually that potential value needs to turn into realized value at Ginkgo. That happens when programs complete, so the, you know, technical work has to finish, and importantly, it needs to be commercially relevant to customers, for us to really get, you know, big checks. While we'd love to show you really flashy blockbuster examples of that, and we do believe those will come in time, we don't have them yet. What we do have is some singles and doubles already. We've been able to stack up about $1 million of royalties and a couple $million of product revenue streams that are more recurring revenue that you can see on the left.
Then we've achieved, you know, tens of millions of sort of one-time milestones, through our Cronos partnership, which we've been discussing over the past several quarters. Although we haven't monetized our equity positions to date, we do expect in the next year or two there will be liquidity opportunities in that portfolio. We're sometimes asked about our philosophy on this, and it ends up basically varying, you know, depending on how these programs play out. I wanna bring it all together by laying out an illustrative biopharma discovery program. You can see the timing difference between fees, milestones, and royalties, and also the potential embedded in even a single-digit royalty rate in this market. Bottom line is I'm really excited about the downstream value share potential that resides in our current program portfolio.
The 100 programs we plan to add in 2023 should significantly strengthen our potential downstream value, I look forward to updating you on our progress over time here. Okay. All right. Let's talk about biopharma, which is one of the areas I'm excited to add a lot of downstream value share. I'm going to continue to remind you about biopharma because it is the most valuable and fastest-growing market for us in terms of new programs. It's also the newest market for Ginkgo. The thing to understand about the biopharma industry is that therapeutics come in many different flavors. These are referred to in the industry as modalities. Okay? Small molecules is one modality, and that's, you know, drugs like aspirin or statins, right? Biologics is another modality, and that's drugs like insulin or antibody therapies for cancer.
You have RNA therapeutics like the COVID vaccine and newer modalities like gene and cell therapies. Ginkgo is very unique in the industry in that our platform can support both discovery, you know, and that adds up at the top, and manufacturing programs in a wide variety of these modalities. How do we know that? Because we have signed deals with very scientifically skeptical R&D leaders at companies across all these modalities. I'm really proud of all the logos you can see on the slide there. These are very sophisticated customers who typically have their own highly capable internal R&D teams that they can use for these projects. It means a lot to us when they choose to work with Ginkgo instead.
Why would a customer work with us, it's a question I frequently get asked, if they could just hire their own scientists and do it in their own labs? You know, as I said at the very start of the call today, it is because Ginkgo is offering things, automation scale or data or IP, that the customer simply can't access in-house. You know, it is as simple as that. We have to have something differentiated or these customers won't sign up. Importantly, biopharma customers often want to see scientific data that shows the application of our platform in their specific area of interest, like, for example, their modality or whatnot.
I don't have time to review it all today, but I'd recommend you watch my talk from the J.P. Morgan Healthcare Conference, you know, just, you know, back in January, as it was largely focused on biopharma, since there's a lot of potential customers in the room there. And you could see data I shared, you know, on the right here in gene editors and cell therapy. In fact, we had over 80 customer meetings at J.P. Morgan this year. Really a night and day difference from a couple years ago for Ginkgo in our ability to sell in the biopharma market, and that's thanks to having all this new data demonstrated in these different modalities. Okay.
The question I also get asked a lot is, if biopharma has such big R&D budgets to support near-term cell engineering service revenue and bigger downstream value share opportunity, given the value of therapeutics, you know, like why didn't Ginkgo just start in the biopharma market, you know? Why did we start in the industrials market? And the reason for that comes back to our business model. I will remind you, we are a services business. That means that in order to move into a market, customers have to choose to work with us. They have to sign up for a deal. Okay. We cannot enter a market like a product company can just cause the board or management thinks they would be great at drug development, you know, or whatever the product is.
A customer has to tell us that our platform is good enough by signing up a deal. You know, simply enough, five years ago, our platform wasn't differentiated enough to overcome the internal scale of biopharma R&D groups. I mean, these groups are very scientifically excellent and very well-resourced. We could, on the other hand, overcome the scale of the smaller, less-resourced industrial biotech R&D groups. That's why we started in that market. It was for sales reasons, right? If you compare it to today, in industrial biotech, most companies have, as a result, either considered Ginkgo or know who we are, right? We've been operating there for a while. In biopharma, we are meeting potential customers that have literally never heard of us or who, at a minimum, don't have any idea what our capabilities are.
That's very exciting from, like, a sales potential perspective, you know? Once we get a first deal with a biopharma company, we can often expand within that organization. We're seeing this. We can cross-sell from a manufacturing deal and then go and sell a deal into the research groups or from a research group in one modality in the same company to a group with a different modality focus and so on. You know, I personally really like doing enterprise sales, and this is the sort of thing that gets you really excited, if you like doing these deals. They're really great tools. In industrial biotech, on the other hand, you know, we believe the market potential is enormous.
The application of biotechnology in things like chemicals and materials and so on, energy, it is much more nascent. Biotech hasn't penetrated into that market like it has in, you know, pharma or ag. As that biotech market grows, I think we're so embedded with those companies in that space, we will grow alongside that industry just as fast as it goes. Finally, in some ways, we actually have a lower hurdle to sell into biopharma customers because they're actually used to outsourcing some of their R&D. Like I mentioned earlier, it tends to be more of the run-of-the-mill stuff they outsource today to that contract you know, research CRO industry. In industrial biotech, we had to educate those companies on this sort of CRO model, this outsourced services model. In biopharma, they already know it.
They just haven't been using it, you know, as much for things like discovery. That's huge tailwinds for us. Makes the deals a lot easier to do. Okay. I wanna finish on biosecurity. This business continues to develop nicely, and I wanna dive into that a bit today. You know, candidly, I think, you know, we're probably not getting enough credit from this today from investors, and I think that's a bit shortsighted, I wanna spend a little more time on it. Okay. I wanna start with a reminder that COVID response efforts were not simply a nice public service Ginkgo did during the pandemic or a transitory source of cash flow for Ginkgo. Our intent has always been to establish lasting biosecurity infrastructure.
The reason for this is that our mission at Ginkgo is to make biology easier to engineer, and it is essential that we do that responsibly and with care. Just like if you think of, like, as a comparison, the expansion of kind a power and access to computers over decades ultimately required robust cybersecurity to make sure we were using, you know, those tools safely, the expansion of capacity and access to synthetic biology is gonna require robust biosecurity tools to make sure we're approaching that safely. Importantly, this is not just conceptual. You know, as Mark discussed in his guidance, almost half of our 2023 revenue is expected to come from more recurring revenue contracts with federal and international entities. That represents a significant shift compared to this past year.
We're now seeing our long-term intent, like our interest in long-term usage of biosecurity, filter into our financial results and outlook. What does this evolution look like for our business? Our COVID monitoring programs, the programs that have comprised the vast majority of our biosecurity revenue to date, primarily consist of a collection platform going out and sampling folks, and then analysis and reporting to U.S. State Departments of Public Health and school systems. Those activities have been primarily volume-based. In other words, our revenue correlates with the number of tests we collect, and much of those have been in K-12 schools.
There's still a path to sustainable revenue in domestic COVID monitoring, but it's not likely in K-12 schools as the end of the emergency order I mentioned earlier in the US this May will dry up the funds states have been using to do that monitoring. We've been working on new testing modalities such as wastewater, and we'll continue work on adding new nodes in our network domestically outside of schools. Our longer-term biosecurity infrastructure business looks a bit different. It, though it does make use of a lot of the muscles we've built in both data analysis and logistics over the last two years. We wouldn't be able to move as quickly as we have been here, frankly, without the work we've been doing domestically. The canonical example of this is our airports programs.
You can see in that program we're collecting wastewater from planes and also anonymous samples from passengers, when we get a positive, we sequence, we look at the DNA, and we look for new variants of COVID, as well as other infectious diseases. This has been a really successful program, you know, early cases of Omicron and so on, we talk more about it. You know, we'll have collection platforms and sample analysis, but also additional assays and add-on analytic services that we apply through that platform. For example, in partnership with IARPA in the U.S., we developed a tool called ENDAR, which can detect engineered DNA sequences. In other words, okay, I just sequenced this, you know, virus from an airplane. Was it intentionally manipulated in a lab?
That's a, that's a true, real biosecurity sort of application built on top of our platform. The net of all that is a business that has significantly more service and subscription fees rather than volume-based revenue. The growth drivers in this business today are new nodes, for example, new international contracts in airports as well as new analytics modules that can drive incremental service fees. We say this a lot, but biosecurity here in the U.S. requires global biosecurity because viruses do not respect borders. We saw this with COVID, and you can see we've already begun operating our biosecurity services on multiple continents and plan to continue to expand. Our goal here is to have the equivalent of what radar systems and satellites gave us for monitoring the weather.
Instead, we wanna be monitoring the movement and the evolution of the DNA of infectious diseases. It is simply irresponsible that the world didn't have a kind a bio radar network like this in place before COVID. You might notice we are still having tedious debates on where COVID even originated from? That would not happen if we had had a robust bio radar system like this in place. You know what? It is time to build this radar network now, and Ginkgo plans to be the leading provider of technology and services to build it.
As a final note, just the other day, CDC released a favorable report on our aircraft wastewater pilot as part of their public reporting, and they found that 81% of international flights into New York City that we tested this fall had SARS-CoV-2 genetics in their waste. The CDC's sponsorship of this work helped set us up as a real leader in this space around the world. Our international work provides real value back to the U.S. government. There's a nice feedback loop there. We are honored to be supporting the CDC efforts here. It's a really important program. It has a lot of utility in the long run. I am really proud of the work the team has done in biosecurity the last couple years.
Anyone who was directly involved in a very fast-moving COVID response knows it is a unique experience and provides credibility that you just frankly can't get any other way than living through it. The biosecurity team and Ginkgo as a whole had that experience keeping schools open across many states during the Omicron surge at the end of 21 and early 22. That is a real lasting brand value and credibility for Ginkgo as we now expand internationally with our biosecurity offerings, and, you know, the team should really be proud of it. 2023 is shaping up to be an important year for Ginkgo. There are plenty of challenges in building a scaled cell engineering platform, and our team is committed to pushing through the next level of operational efficiency to drive our mission.
We hope this has been a useful update and deep dive for you all. I hope to see many of you in person at Ginkgo Ferment, our annual conference in April. If you'd like to join, please just reach out to us. All are welcome. I'm very excited about Ginkgo's position and outlook and look forward to updating to you on our progress in the coming quarters. Finally, you know, before I hand it to Anna Marie to do our formal Q&A, I do wanna just take a minute here and talk upfront about some topics that I know are top of mind for investors in Ginkgo right now.
Actually, Warren Buffett has a great quote about how if you're transparent about what sort of company you're building, then the investors who are aligned with that will find you. He actually gives this great analogy. He's like, "You know, you can throw a dinner party or a rave. You know, there's nothing wrong with either of those. You know, just make sure you put what it is on the invitation." As a reminder, you know, this is what we put on our invitation for Ginkgo. From the founder letter in our S-4 filing, when we took Ginkgo public, we said, "To our stockholders, we are seeking to build a company with enduring long-term value. We'll not make decisions based on short-term market or accounting considerations.
We'll make decisions to ensure Ginkgo is the long-term market leader. Advancing our mission is resource intensive. We expect to continue to reinvest cash back into the business to scale our platform and expand into new markets with a focus on long-term value for the company and its stockholders. Market leadership will enable us to scale, which is critical for our platform's growth. Growth increases our future free cash flows and ultimately stockholder value. To be clear, we're not here to make a quick buck or to manage the quarterly earnings. We're here to build a company of lasting value. That doesn't align with the timelines that some investors operate under, frankly. There's nothing wrong with that. They're just not gonna like our dinner party.
However, we are fortunate to have some terrific long-term-minded investors on our cap table for many years that have been, you know, very happy, and we've been very happy to see their continued growth alongside us. We're also excited to see some new names at our party who've been able to take advantage of the current market environment to open new positions in Ginkgo. However, the other group that I see our invitation speaking to is individual investors that are interested in Ginkgo's mission and in seeing Ginkgo accomplish our goals in cell programming and biosecurity for the impact it will have on the world. you know, I personally spend time keeping an eye on what these folks are concerned about. There's a lot of it on social media.
I wanted to chime in on a few topics I saw coming up repeatedly from individual investors. I'll read and respond, you know, to a couple here to give you a gist. This is one that came in from our email, right? "So I feel that your stock price is still undervalued based on the business opportunity that I believe exists, and yet I see leadership selling shares in large amounts on a near-daily basis. This is a concern for me, since insider ownership doesn't appear very large to begin with, and yet even when the stock is at near all-time lows, management doesn't appear to have the confidence to keep their shares. Why is this?" Okay, I'm very happy to speak to this. Reshma, Austin, Barry, Tom, and I founded the company.
You know, we started this company 15 years ago, and we bootstrapped it for about 6 years with no venture funding, buying equipment on eBay, you know, the whole thing. Such that we now today, we still own over 400 million shares, and over 20% of the company. This is something I'm very proud of. The first point to make is, as a group, the founders are, you know, larger shareholders, than any single institutional shareholder in the company. I hope it's very clear, and I wanna clear up that discrepancy that we make and lose money right alongside our investors. Why do folks see us selling now? First, we had some RSUs from before we went public that vested.
Whenever an employee's RSUs are distributed, the company automatically executes a sell-to-cover transaction for the tax obligations that are owed when those shares are distributed to the employee. Sorry, those sales to cover tax obligations are now over. Second, about 6 months ago, when we'd been public for about a year, we put in place 10b5-1 plans, which are now effective. As background, a 10b5-1 plan is set well in advance and can't be changed without a waiting period. This is a way to ensure executives of companies aren't trading based on any near-term information that they have about the business. You can see the sales from those plans in Form 4s that are filed publicly. Through the end of last week, you know, my personal plan had sold $1.6 million shares.
To give you context, this represents less than 2% of my total shareholdings of approximately 95 million shares. You know, you don't get to this level of ownership in a company by selling out over the years. The reality is, we really haven't had that much liquidity to date and have continued to pay ourselves under market salaries as well. In fact, you know, if you look, I have the lowest salary. I thank God I do, out of the 3 folks on this call. In any case, I do remain one of the largest shareholders in the company. Hopefully that's now clear to folks. The other thing I've seen is that we don't care about the share price, right?
You know, how can you instill confidence in, you know, in investors when the CEOs don't value the stock, right? This is from Biodazzles11 on Twitter. As I mentioned, the founders as a block are the largest shareholders in the company. I promise you, we are not happy with how the stock performed in 2022. However, I also recognize that 2022 was a painful year for our investors. You know, we felt it, like I said, but our employees, who are another large group of shareholders, they have felt it. What I can assure you is that we're all still showing up to work every day because we believe in this mission, this company, and each other here at Ginkgo. As founders and leaders of the company, we need to lead by example.
We have requested the board, not grant, you know, me and Reshma and Barry and Austin any new equity this year in our compensation. The idea is we'll only make more money, this year if you do, by growing the value of our existing shareholdings in Ginkgo. Okay, I want to just cover that up front. With that, I'm gonna hand it off to Anna Marie for the formal Q&A. Thanks.
All right. Thanks, Jason. I appreciate that. We'll switch to formal Q&A in a few moments. As usual, I'll start with some additional questions from the public and then just reminding the analysts who are on the line that if you'd like to ask a question, please raise your hand on Zoom, and I'll call on you and open up your line. Thanks, everyone. We'll open Q&A in just a moment. All right. I think we're all back here. One more question from retail. We always start there. This is from Twitter, Ryan, and then a lot of numbers that I'm not gonna be able to get through. Is there more or less appetite from larger clients for the Foundry services given the current economic climate?
Yeah, I can take that. I think companies in this environment are basically focused on efficiency. That affects small companies and large companies in two different ways. The smaller companies, it does drive more interest for our services. I think they're looking to cut, you know, cut fixed costs, spending, move to more efficient outsourced providers. Like we do see that. Larger companies, I think it's more neutral. It goes one of two ways. Either similar to the small company, they're looking to drive efficiency, open their eyes to an external provider that is a variable cost option on the services side and so on.
They say, "Actually, we're gonna cut back our R&D budgets and just, like, maintain our internal stuff and cut our external spending." That the bigger companies I think come out of in the wash a little bit, but the smaller companies, it is driving more interest.
Thanks, Jason. All right, we'll switch over to analysts now. We'll take the first question from Matt Sykes from Goldman Sachs. Matt, I've opened your line if you just wanna unmute.
Great. Can you hear me?
Yep.
Yeah. Hey, Matt.
All right. Good afternoon, everybody. Thanks for taking my questions. One, we really appreciate the rationale for not including downstream in the forecast. I guess I just wanted to ask, in terms of behind that rationale, the inherent unpredictability of that downstream value is, I'm sure, a key part of that, 'cause I know we deal with that too on our end.
Yeah.
Has there been any change in terms of the cadence or pacing of potential downstream value? Like have projects been extended and things like that that makes it sort of elongate that process, or is it really just about the inherent unpredictability of that, of those, milestones and royalties?
Yeah. I can take part of this, and Mark feel free to add to it. The reason we don't wanna guide it is the unpredictability, right? In other words, you know, I think 2 things happened last year. 1, we had been saying we thought this would happen. The thing, you know, in general, the milestones are more unpredictable than that actually did happen. That's, you know, that's bad news for our interaction, you know, with all of you. 2nd, internally, like the whole team got focused on, like, 1 external milestone, you know, whatever, right at the end of the year, when at the end of the day, like a lot of what makes those milestones happen or not is not actually in our hands, it's in our customers' hands.
We're doing gymnastics that I think are not, you know, particularly, mission critical for us compared to driving the efficiency and the effectiveness of the platform that will just yield more things ending. Yes, you know, you'll still be dependent on a customer to do various things, but it'll, that again will come out in the wash on in terms of stuff finishing. I didn't like what was happening internally. I didn't like what it was doing for our relationship, you know, with investors and analysts, and so that's why.
Got it. Thank you very much for that detail. Just a follow-up question. As we focus on just sort of the Foundry service revenue, and the fees, and you've talked in the past about sort of toggling contracts to depending on the type of program it is, given the focus on just Foundry service, and that's what's gonna be modeled, is there a view to maybe try to increase those R&D fees up front to boost the growth in that business? Secondarily, I noticed in one of the slides you talked about trying to drive milestones earlier, based on technical completion or clinical progress?
Yeah.
Is that also a part of kind of, not necessarily front-loading, but?
Yeah.
creating a little bit more certainty around the revenue stream that you're generating?
Yeah. You can think of it like front-loading. I think like the... You know, look, this is one of the things I like. I mentioned this during the talk around diversity of options, you know, like allows you to play the game differently depending on what's happening in the environment. If we're concerned about, you know, like the larger macro environment and we wanna create, you know, have a bigger margin of safety, absolutely. We can drive deals towards more fees and more milestones. Now, as opposed to say, royalties, which like you could argue pay more, but later, all right, to simplify it. More equity. I think the, you know, the challenge is that fees can have a counteraction, you know, a countereffect with sales.
In other words, like the customers get more concerned about the fees than switching from like royalties to milestones. It's a little easier for me to toggle from royalties to milestones without affecting sales. It's a little harder to driveway higher fees and not, you know, get worried about sales. We have to just watch that really closely. I think obviously we would love to do that. It gets us to, you know, move towards profitability faster and all the things. It is something I also. We're making a big mistake if with the margin of safety we have, we slow down our growth. Like growth is hugely valuable for Ginkgo. It adds Codebase, it adds Foundry scale, it adds future downstream value.
Like, we don't wanna slow down sales because we're trying to be, you know, greedy about fees.
Got it. All right. Thank you very much.
Thanks, Matt. All right, Rahul Sarugaser from Raymond James. I've opened your line. Go ahead if you wanna unmute.
Great. Can you hear me all right?
Yeah. Hey, Rahul.
Terrific. Good evening, folks. Thanks so much for taking our questions. It's great to see, I'll just reiterate, it's great to see you decoupling the milestones from Foundry revenue. As we now look at that, essentially NPV of milestones, and, like, you gave us a case study on slide 2022, which is terrific and good guidance. Should we be thinking of that as sort of, kind of the average case study? You're giving your previous guidance of around $15 million of NPV per project. You know, when you apply the same variables to that average case study, is it still around $15 million or is it higher, is it lower? Can you give us just sort of a directionality on that?
Yeah, Rahul, I might jump in and then let Mark and Jason supplement. One of the things we were trying to do with this updated sort of package of information is to give you the tools to look at, look, these are what average royalty rates look like by industry. This is what that timeline looks like. You know, there's plenty of data out there around, okay, once a drug makes it to clinic, what is the probability that it gets to customers?
Based on, you know, candidly your assumptions around probabilities of success across the portfolio and then looking at the data that we're able to provide on a quarterly basis around program mix between industry and between different type of downstream value, we're hopeful that that'll give you quite a few more tools to make a judgment there. It's a hard exercise even with perfect information, as Jason mentioned, but we're trying to share the information that we have.
Great. That's, that is very helpful. Just a very quick follow-on question perhaps for you, Mark. There were $17 million in milestones on this quarter. Could you give us a sense for any milestones that you were expecting this quarter in Q4 potentially leaking over into Q1? You know, again, with this decoupling, we need to start actually making some more accurate assessments as to what those or estimates as to what those milestones will be in the next quarter.
Yeah. As we had mentioned, during the J.P. Morgan update, we did see some slippage of two milestones in effect, discrete milestones that we had targeted to hit in Q4 and didn't. We are still actively working those. We do believe that we've largely completed the technical work there. There is some dependency on parties outside of Ginkgo and manufacturing facilities that are not ours to conduct successful pilots for demonstrating milestone achievement. Those are still very much milestones that we are working on achieving, but there's just more work to do there, so.
Okay, great. Thanks again for taking our questions.
Thanks so much, Rahul. Tejas, I am opening up your line. If you wanna unmute, go ahead.
Hey, guys. Thank you. Thanks for the time here. maybe I'll start with a quick follow-up on the, on the milestone exclusion, aspect of it again. Jason, do you think you'll disclose the aggregate potential milestone number on a quarterly basis, even if you sort of leave the timeline around the achievement of those milestones vague? Or is that something you anticipate doing perhaps only annually?
Yeah. I don't think we'll do it quarterly because part of the challenge is that, like, this year was the first year where, like, it was big enough that by not... Like, I wouldn't have just told you what a customer who didn't want to publicly announce the milestones had done with us, right? That's sort of the game we're playing with sharing what we're... We're happy to have been able to share more of this with you all today, and hopefully that's well received. But we also have to maintain confidentiality with our customers. I think maybe it depends on how the numbers eventually get on new programs and so on in the quarter, but I think it'll be tough to do it for a little bit.
Got it. Okay. Then any color you can share on the mix of standardized versus custom programs today, where you hope to be by year-end? Could this have a near-term impact on customer demand for foundry services? Specifically, you know, one of the joys of working with earlier stage companies is that you get a lot of attention from your vendor. So, as you look to a sort of a more cookie-cutter offering to the extent possible, how is that dynamic something you hope to navigate?
Yeah. I'm super excited about this, to be honest. It's an experiment we're running in the market, right? To date, if you look at Ginkgo, the history of Ginkgo is, like, basically all custom deals. All right? What I mean by custom is, like, what do you want a cell engineer to do, customer in the pharma industry or fragrance industry or ag industry? You know, okay, you want a protein, you want a small molecule, right? Your challenge is, you wanna optimize the manufacturing. You know, you have something over here on discovery. It's all over the place, okay? Our, you know, the team at Ginkgo has had the very hard job of receiving all these custom things and somehow running it through a common lab infrastructure. That's a lot of our secret sauce.
This is our flexible automation, the software logistics, all this stuff where I say we run a lab like a factory. We have the extra challenge that we're not like, you know, a Quest or a Labcorp that's running the exact same diagnostic test 1 million times like a factory. No, no. It is variable R&D being run through a factory. That is very hard. You know, we're still gonna offer that. If people need that customization, no problem. What we are seeing is, like, as we talk to customers, sometimes either a whole project or a portion of a project we keep seeing over and over again. A good example of this is find me a better enzyme, okay? You might want this if you were, say, an enzyme therapeutics company, right?
Company like Synlogic, you know, in those bugs that they have as a probiotic is a little enzyme. That enzyme needs to be optimized. They care about enzyme optimization. You know, it could be you're an industrial biotech, you want a new enzyme for laundry detergent. It could be as part of a 4-enzyme pathway to make a small molecule chemical, the third enzyme in that pathway needs to be optimized. Well, all of those kind of feel like the same project. That's where we're running this experiment to see, you know, could we make that essentially more cookie-cutter offering? It would let the deals close faster. It would make the work happen faster. The customer, this is what I'm super excited about, over time, starts to have more certainty of success, right?
My underlying belief is, like, the thing that really makes the biotech industry, not the tech industry, not software, is its unpredictability.
Got it.
People have to spend money out of research budgets. They spend money hoping they will get something. That is not like what a software company does. They spend money on a bunch of software engineers, they know they're gonna get software. You spend money on building a bridge or a building, you're gonna get a bridge or a building. We in biotech are still living, like, in the pre-engineering confidence era. Part of the idea with these standard offerings is to carve pieces out that we think are more predictable. Hopefully there's a nice feedback loop where even though the customer is getting something a little more standard, they can have higher confidence they're gonna get it.
Got it. One quick one for Mark here. Mark, any color on cash burn you can share for 2023? Is it fair to assume a pretty material dip in 2024, that essentially sort of underpins your confidence in not needing to tap the capital markets again?
Yeah, so let's start with 2022, just to kind of frame it for you. The operating cash burn, including CapEx in 2022 was roughly $300 million. If you consider that there was a big contribution from biosecurity in 2022, it was roughly $70 million of EBITDA. You can sort of start to... I think that's a good starting point or a framework for thinking about what 2023 would look like. Even though we don't guide to the cash burn number, what you can do is assume, of course, you're not gonna get that big contribution from biosecurity. Also assume that we are expanding the business, and so there is some OpEx expansion.
That should sort of get you to a place where you can think about what burn would be in 2023. 2024, that's, you know, we're not commenting that far out. As Jason mentioned in the sort of core discussion, huge focus for the company this year is on driving that operating efficiency within the Foundry. We do think that is one of the absolute sort of key levers, or initiatives that will ultimately let us reduce the cash burn.
Thanks, guys. Appreciate the color.
Yeah. Can I add one extra little bit to that? If we do our job and drive efficiency this year, in other words, more and more and more programs without, you know, really ballooning spending, that we have a more efficient system to scale up in the future, right? It's, it's a very healthy time right now, I would say, for us to be having this focus on sort of efficiency and effectiveness on the platform side in terms of delivering against programs. If we work out, there's a lot of people in the company are working on this right now listening. Like, if we solve this problem, like scaling in the future is gonna be a dream.
I think this is really what it's about this year, that's why I'm excited that it kind of there's an alignment between our commercial targets, what we're trying to do, internally and the global strategy of the company. It's really exciting. It's one of those things that's particularly right down the middle for making biology easier to engineer. From, like, a mission standpoint, like getting better at selling, it just doesn't feel as good as like when we really tune up the Foundry. you know, that feels like delivering on the mission in a very, very practical way. I'm excited about 23.
Got it. Thanks, Jason.
Yeah.
All right, Steven Mah from Cowen, your line is open if you wanna unmute.
Okay, great. Thanks for taking the questions. Two-parter here on the biopharma business. On the industry mix of active programs, looks like pharma and biotech is about 35%. Do you expect that percentage mix to continue going forward? Then second part, you know, we've heard from peers that in their partnership discussions, you know, there's a lot of partners that don't wanna pay a lot of money up front because of cash conservation concerns. However, you know, your 65% growth in the cell engineering services in 2023 suggest you aren't seeing that. Could you maybe help us reconcile that and maybe give us a bit more color on the trends you're seeing on the weighting of upfront versus downstream value?
Yeah, I can comment on that. In terms of like, where we would like to go, I think we'll drive more in the direction of biopharma. That's why I wanted to highlight it today. And the main reason, like I said in the talk, is it is just substantially more untapped market for us than industrials. Like, again, companies don't know us. They haven't, you know, they haven't seen our capabilities. We often have these first meetings and then show some data, and there's a lot of excitement. You know, if there was that similar excitement for one of the large industrial companies, they would've said it 2 years ago, right? I'm more waiting for them to have more breakthroughs on the product side and wanna do more biotech.
Not that they, that, like, we're just, they just didn't know about us being better than doing it themselves. Like, I do think you'll see that increase for us if we're doing our job right. Yeah, in terms of people paying up front and so on, this is the kind of point I made on that first question coming in from Twitter. I think for the smaller companies, what you're hearing from peers is right. Like, there's just not as much appetite to pay up front and all that. For the larger companies, I mean, you know, biotech companies have budgets, right? We don't see that as much with the large biopharma, I would say.
Okay. Got it. The 65% growth you're guiding to, that's driven more by just new program adds in, or versus mix?
Mark, do you wanna comment a little bit about?
Yeah, no, it's new programs, it's new customers. Keep in mind that in some cases, we will take equity as a form of consideration for the upfront service fee on a program as well. That's, in some cases, that's how we've handled the situation that you're kind of referencing with.
That's a good point.
conserving cash. That's all in the 65% growth.
For the smaller companies, taking equity in lieu of cash can actually help quite a lot. Yeah. We do some of that for the smaller guys.
One thing I might add, Steve, and I know we've talked about this in the past, is that there's an interesting dynamic where when R&D budgets are getting pressured, the idea of laying people off or closing a facility or something like that is a really hard thing that R&D leads don't wanna be faced with. The idea of working with a vendor that you can scale up and down and treat as variable cost is more appealing and feels a lot safer in an environment like this than building a new plant or hiring a ton of folks when you're not sure, you know, how much budget you're gonna have next year.
I think as we think about what are the factors that could increase penetration in biopharma in particular over time, this type of a macro environment could actually be a nice catalyst for that shift.
Okay. Yeah, thanks for the color. Let me just sneak one more in. Yeah, appreciate why you removed the milestones guidance 'cause of the unpredictability and whatnot, but, you know, at, you know, at a, at a later date, you know, when you have more mature programs, you know, would you be providing guidance at that point? When do you think that would happen? Thanks.
It's a good question. I think it'll be like a law of large numbers thing, right? At some point, there's enough things happening that you're just starting to move with, you know, I don't know, like more obvious trends. I think it will be until then that you'll. For us to do it, I would say, right? Like, I'm sure Apple somehow predicts their App Store revenue, even though they don't know exactly like which apps are gonna fire next quarter because there's just so many of them, and it's sorta just like moving with the internet or something. You know, you know, we're very far from that. I think that's the extreme form of it.
Like somewhere along the way, there's enough in there, you know, you know, we're just enough of a utility that it, you know, comes out in the wash and then maybe we start to do it. I just don't wanna get back in this game of like, you know, individual events prediction, particularly outside of our control because I think it's extremely distracting internally.
Okay, great. Thanks, Jason.
Thanks, Steve. All right, Madeline from William Blair, I've opened your line. If you wanna unmute, you're welcome to ask your question.
Hi, this is Madeline on for Matt Larew. just wanted to go back to something you said earlier. I think that you mentioned that you're gonna be making some investments in the business in 2023 that might offset some of the phase out of the Zymergen impact. Could you talk a little bit more about that, specifically where you're going to be investing?
Yeah. Well, Jason, do you wanna talk about some of the biopharma capabilities?
Well, I don't know the specific hook to Zymergen, so do you wanna explain that?
Yes. What we're really just talking about, Madeline, is OpEx. If you look at Q4, you're gonna have Zymergen costs layered into our Q4 numbers, some of which will be gone by the end of 2023 because they relate to certain support functions that we would think of as sort of transitional in nature. Once the integration is done. You're gonna have some of that cost coming out. Also, sort of a counteracting sort of back would be on the core Ginkgo sort of R&D side, you're gonna have some continued expansion, right? I mean, we don't still hire some people. We still have targeted investments in our mammalian capabilities, for example. So that's all I meant by that. I'm not sure, Jason, if you wanna elaborate.
No, that's right. Yeah. I would say in general, the 23 focus is on efficiency and effectiveness of the platform. In other words, trying not to spend a lot on expansion, but you will see us do some targeted moves, as Mark's saying, particularly in biopharma. Like, we could use more mammalian capacity. Again, the nice thing about our platform is it's not really organized that way. It's not as if we have like just purely dedicated, like only works for mammalian, but like there are certain functions in the Foundry that are more heavily weighted that way. So we would wanna invest more there. Other functions, DNA synthesis and so on, DNA construction, a lot of our assays and analytics, that's not really specific to any particular market.
There we can adjust without having to build new stuff.
Great. Thank you.
No problem. All right, Mark from BTIG, I have opened your line. If you wanna unmute, you're welcome to ask your questions.
Terrific. Thank you for taking the question. Maybe just a question on Zymergen. You know, you completed that acquisition last year. What do you believe to be the core capabilities that you're porting over as we think about 2023 and 2024? Just curious if you're planning to deploy the reconfigurable automation carts or the racks, and then any status on the real estate in California.
I'll speak to the racks and someone else can chime in on the latest on the real estate. Yes is the answer. I'm extremely excited. You can ask people at Ginkgo 'cause I put it in our Slack channels all the time, "When will the racks show up in here in Boston?" You know, we're extremely excited about that flexible automation. Also, the software infrastructure and team at Zymergen is a real gift in terms of speeding up our ability to drive that efficiency and effectiveness of the platform next year, both like just the literal assets and the quick integration of the teams to develop new things.
They also just ran into many of the same challenges we have run into over the last 5 to 10 years, and we saw some, they saw some, and being able to put them together now as one team is a real speed up. So it is a high, high integration on the platform side. As we mentioned during the whole acquisition on the products side, Ginkgo's not a product company, so we're still looking for homes for various of the products and so on. Hopefully, news on that in the future, but the platform integration is aggressive and working well. Mark, I don't know if you wanna speak to the-
Yeah. On the real estate, we did sublease one facility in the Q4. We are, of course, evaluating all the options with respect to the real estate there. That's very much, it's sort of what I would call in a very active exploratory phase right now.
Okay, that's helpful. One for you, Jason, kind of a bigger picture question on Codebase. I think you leverage over 2 billion proprietary protein sequences. You've called out Bayer as one of the folks that's evaluating this, I believe. How should we think about this asset, evolving, and perhaps turning into a commercial engine? When do you think we might hear when and how much you can monetize Codebase?
Okay, yeah. This is a great question. First off, like, think about what we do for a customer, right? Customer's coming in, they want a cell program to do something. That means they don't have it working right now. They need a new thing, all right? There's going to need to be some lab work done. In particular, we need to change the genome of that cell and test whether that change did the thing the customer wanted. All right? One answer is try a lot of designs informed by our design software and so on. A thing that can save you a lot of work is if we have done something similar to what you're asking for, and so we have a lot of intuition about what the best designs will be. Okay? We see this.
We have, like, a really nice case study, I don't know if it's on the website, but, like, where we start with, like, a big. Like, we make, like, 3,000 or 4,000 synthesized enzymes from all over, like, our big, like, you were mentioning that big, you know, 2 billion or whatever, genome, like, gene sequence collection. We go find all these potential genes from our proprietary database, print them or get them printed at Twist, put them in cells, test them. We do that. Then we train our own machine learning model just for that enzyme. Okay? Like, that data goes into a model just for this particular enzyme, then we do it again. We tell the model now to say, "Hey, give me 3,000 new ones to make." We make them. We do it again.
The last improvement, which is the one that gives the most improvement, we only try 100. Because at that point, we've, like, generated data and trained our model well enough that the model is now becoming increasingly predictive, and it's saving you the lab work. What's really cool is now if a future customer wants that particular class of enzymes, we're not starting all the way back at the beginning. We now have this, like, trained up model. That is. We are selling that today. What is the right business model? I, you know, I think it's partially what you're asking. Like, maybe I should just offer that as a service. Maybe you should access that Codebase, but you do the lab work, you know, at your lab at customer X.
Today, we don't think that's great. We think there's a real nice alignment between the throughput that we can run our lab work and the data asset because there's just a lot of high throughput, like, in both analysis and lab that fits better together. You maybe could imagine that in the future. We are not today actually offering that data asset as a standalone product. It is only offered integrated as part of a larger cell program. Does that make sense?
Yes, it does. Thank you for that. If I can ask one last quick one. You know, your guidance for 100 new programs beat our estimate of 80 for 2023. I'm just curious if you've seen any changes in lead time to, like, close a deal. Like, what is your typical lead time from identifying a program and then closing it? Maybe I'd be curious if you're seeing, you know, any changes to the components of your funnel as we enter 2023 here.
Yeah. I can say 2 things. One, I'd say it's the healthiest I've seen, you know, since we started Ginkgo. That's one of the points I was trying to make earlier, is I feel generally good, like, our ability to... By the way, this is gonna vary quarter to quarter, right? It's a similar thing. It's not like total metronome here. Like, as I look across the year, we have a big set of potential, both new customers that have new programs attached to them, but also increasingly inside sales into our current customers, right? I was talking about that in biopharma. You do a manufacturing deal, and then, you know, next thing you know, you're doing an R&D deal.
That type of thing is starting to shorten our deal cycle. We have a very different, maybe to state the obvious, time to close a deal if it's one of our current customers. Like, close the deal, I mean, adding a new program versus a brand new customer. The brand new customers still just take time, right? Like we're looking at, you know, I don't know what it is exactly, but three to six months, right? There is just a process to convince people and so on. If you have a relationship with someone and you have a joint steering committee and you're meeting every, you know, quarter, and you can, you can kind of boot up a new deal under your existing legal agreement. It's just a decision to spend money, right?
When we do a new deal, oh my gosh, right? You know, there's all the negotiations, right? We like to get that kinda umbrella deal in place, and then it makes things on average faster. You kinda see a bimodal, depending on whether it's a current or a new customer on timing.
Great. I look forward to Ferment, and I'll see you next month.
Yeah, please do come out. Yeah, it's gonna be a good one.
Thanks, Mark. All right, Gaurav, I've opened up your line. Go ahead.
Hey, all. How's it going? hopped in a little late, so apologies if these were covered. Just 2 quick ones from me. First, you know, it looks like, you know, bulk of the new 2022 programs were ag, bio, and pharma. Seems like this will remain the case in the near term in terms of, you know, those 2 end markets really comprising the most of the new programs. You know, are there any attractive, relatively untapped end markets to look for that can creep in more materially and contribute to new cell programs in the midterm?
Great question. I don't know. I mean, you know, this is one of these things where I think we benefit from being a platform that we don't have to be too certain of where that's gonna be. You know, like if you were requiring the clock three or four years ago when we actually did that Cronos deal, like, you know, I remember cannabis was made legal in Canada, and suddenly, like, biotech for cannabinoids was on fire. You know, there was a lot of interest, startup companies, 18 things happening. You know, we could just flex into that even back then, right? Now we're substantially more flexible, you know, than we were three or four years ago to move to where the action is.
I have, like, my personal thoughts probably, but like, to some degree, it doesn't matter, right? Like, what I'd rather make Ginkgo able to do is go wherever it is, and then we just watch, right? We don't, we don't have to try to predict it. I do think you're seeing, at least on the, like, as a consequence of COVID, you are seeing countries wanting to shore up critical infrastructure like onshore or like, I think it's called like, I don't know, whatever friendly country shore. You know, you know, and basically and it's changing where certain activities like for example, API manufacturing is done.
You might see opportunities in API manufacturing that just weren't there, you know, 2 years ago, not because of like particulars on the economics, but because countries are putting their foot on the scale to make sure they have access to critical drugs, you know, in the event of a more polarized world, as the one example I can think of.
Got it. Thank you. Just the last one, just a quick one for me. You know, it seems like I think it was on slide 20, right? Of that $200 million of milestones, or potential milestones between 2021 and 2020 that you guys, you know, racked up in terms of the pipeline. You know, have any of that been realized or is it still early days?
Yeah. Garth, maybe just to give you a little bit of additional context. You know, the milestones that are in that chart would represent, you know, not intermediate.
It's like longer term. Got it.
These are at the earliest kind of completion of a technical program milestones. Quite often, you know, a lot of them are further down the value stream of the product. Given that our average product is or average program is 2 years, we wouldn't have expected to see milestones from those sources yet.
Got it. Thanks, guys. Appreciate it. Congrats.
Thanks much.
Thanks.
All right. Our last question here is from John at Bank of America. John, I've opened up your line. John, you might need to unmute. We can't hear you.
Can you hear me?
Yes.
Yes.
Hey, thanks for putting me on. I would like to go back to the financial guide here. Given that you guys just discussed the recent milestones being pushed out, and you expect to capture that soon, is it fair to assume that the Q4 Foundry revenues were just purely fee for service? Again, if there's any sort of quantifiable range in terms of the milestone revenues that you might be able to recognize in 2023, if you could provide that would be great.
Yeah. Q4 revenue did have milestone revenue in it. We've got that on slide 10 in the deck. It breaks out, you'll see it was about $17 million of the $50+ million of revenue in the quarter was in fact downstream value share milestone revenue. The second part of the question was 2023 expectations. I guess I'll just sort of reiterate the comment I made before. There were some discrete milestones that we were hoping to hit in Q4 that we didn't. We're still very much actively working on those. We think the technical work is largely done. There are some factors outside of our control there, but we are still very much working on that.
Gotcha. Thank you. That's all for me. Thank you.
All right. Thanks, John. That was our last formal question. Unless anyone's got any closing remarks, we can say good night.
Thanks, everybody.
Bye.
Thanks.